Attendance is free and open to the public, online or in person.
Attendance is free and open to the public, online or in person.
Written while embedded in our CRESCYNT Data Science for Coral Reefs workshops. Amazingly, everyone who participated in workshop 1 – Data Science for Coral Reefs: Data Rescue – learned even more than they thought they would. We’ve had wonderful NCEAS trainers, spectacular participants with amazing datasets, and a lot of hard work over 4 days (March 7-10, 2018).
UPDATE: Here is the Data Rescue workshop agenda we used, with links to all of the training slides.
In the second intensive workshop – Data Science for Coral Reefs: Data Integration and Team Science – people will be introduced to R Studio and GitHub if they have not used them before, and then we will work on exploring techniques for integrating disparate datasets. We’ll start with a pair of datasets at a time, and efforts may involve extracting data from one dataset based on observations from another; upscaling, downscaling, resampling, or summarizing to make intervals and scales mesh – exactly the kind of process that coral reef researchers have said is a recurring challenge in asking bigger science questions.
UPDATE: Here is the Data Integration and Team Science workshop agenda we used, with links to all of those training slides and exercises.
Each workshop group is writing a paper to summarize and share lessons learned, so please stay tuned for those!
We experimented with an unusual process for these workshops: two days of training followed by two days of workathon. We’re liking it! Tell us what you think about these topics and training materials. What other workshop outputs would you like to see?
Several of the coral reef scientists featured in the film Chasing Coral are CRESCYNT participants, including our PI, Dr Ruth D Gates, and we congratulate and thank them all for their eloquence, passion, deep experience, scientific integrity, and significant intellectual contributions to this powerful film. Chasing Coral‘s producers are making it available free for public screenings, and its focus now is educating audiences and moving people to action.
EarthCube domain scientists, computer scientists, data scientists, and new members gathered in Seattle June 7-9, 2017 to communicate progress, connect over projects and science challenges, plan for future collaborative work, and welcome new participants.
Most of the presentations and posters from the meeting are available here. CRESCYNT program manager Ouida Meier delivered an invited talk on sci-tech matchmaking (video|slides, helped facilitate breakout sessions focused on clarifying requirements and resources for virtual workbenches (summary), and presented CRESCYNT coral reef use cases and workflow collaboration during a poster session. Discussion and collective brainstorming throughout the meeting was very dynamic and fruitful.
Download a larger pdf of the CRESCYNT poster – Earth Cube AHM 2017.
Read more EarthCube in the News.
We all recognize that communication and education about science concepts and the process of science is more important than ever. Fortunately, coral reefs are charismatic ecosystems that inspire much curiosity, concern, and interest from many sectors of society. While there is no shortage of stunning images and videos online, resources that combine these visuals with robust educational content can be more challenging to identify; they do exist and I’ve put together some of my favorites here. The list is not exhaustive, and we welcome your suggestions for great additions.
EDUCATIONAL WEBSITES. These resources provide educational information about coral reefs across multiple levels and concepts, often using multimedia.
Khaled bin Sultan Living Oceans Foundation Coral Reef Ecology Curriculum. The KSLOF has perhaps the most comprehensive website on coral reef ecology. The site is set up as a course with several units and resources with very nice graphics and high quality videos geared specifically for students and teachers. Lessons are aligned with the Next Generation Science Standards, Ocean Literacy Principles, and Common Core State Standards for K-12, but some of the material could easily be used in a college level course. A major downside to this site is that one must register to use it.
Smithsonian Ocean Portal. The Smithsonian’s website for coral and coral reefs is not as media-rich as the KSLOF, but does have a great deal of scientific information about corals. Only a couple of lesson plans are offered, but the richness of the content lies in the embedded links to additional images and other stories. The science is backed up with oversight by Smithsonian coral reef biologist Nancy Knowlton.
MarineBio Coral Reefs. The MarineBio website is somewhat of a clearinghouse for other marine bio resources, but the educational content on coral reefs is good quality and quite extensive if you follow the links. Like the Smithsonian site, there are links to both internal and external resources. The short videos featured throughout the site, generally from outside sources, are particularly engaging.
OTHER WEBSITES WITH EXTENSIVE INFORMATION ABOUT CORAL REEFS
VIDEOS ABOUT CORALS AND CORAL REEFS. There are loads of videos of corals and coral reefs on the web; these excellent examples incorporate educational content.
Chasing Coral (available through Netflix)
Coral bleaching caused by heating water (time-lapse)
Coral Bleaching on the Great Barrier Reef (animation)
SCIENCE NEWS SITES. These science news websites regularly post stories on coral reefs.
Thanks to Dr. Judy Lemus for this cream-of-the-crop list. Judy is a Faculty Specialist in Science Education at the Hawaii Institute of Marine Biology; fortunately for us, she is also the Education Node Leader for CRESCYNT. You can download Judy’s list in pdf format.
Scientists need better ways to analyze and integrate their data and collaborate with other scientists; new computing technologies and tools can help with this. However, it’s difficult to overcome the challenge of disparate perspectives and the absence of a common vocabulary: this is true of multidisciplinary science teams, and true when scientists try to talk with computer scientists. Workflows, as a way to help design and implement a workbench, are needed both as a collaboration space and a blueprint for implementation.
Take a look at a recent presentation to the EarthCube science committee (video) or an earlier presentation offered at ASLO 2017 (slides and voice) to see a flexible and low-tech way to simultaneously (1) facilitate necessary sci-tech interactions for your own lab and (2) begin to sketch out a blueprint for work that needs to be done. Subsequent technical implementation is possible with new tools including Common Workflow Language (CWL) as a set of specifications, Dockers as modular and sharable containers for either fully developed tools or small pieces of code, and Nextflow as an efficient and highly scalable definitive software language to make the computational work happen. Look for a post in the near future by Mahdi Belcaid to describe the technical implementation of these workflows.
OPPORTUNITY! We will be hosting one or two in-person skills training workshops in the coming months, with your expenses covered by our NSF EarthCube CRESCYNT grant, focused particularly on training early career professionals, and will work through some challenging coral reef use cases and their cyberinfrastructure needs. We collected some great use cases at ICRS, but would like additional cases to consider, so we invite you to describe your own research challenges through this google form. Please contact us for more on this, or other issues. Thanks!
AGENDA with LINKS and REMOTE LOGIN information at bit.ly/cybertools-aslo
Join us for a great workshop!
Can’t attend in person? Join the workshop online! (starts 11:00am PST, 2:00pm EST)
WORKSHOP TOPICS AND PRESENTERS:
Mohan Ramamurthy, UCAR [video]
Elisha Wood-Charlson, UH Manoa [video]
Jay Pearlman, J&F Ent, U Colo [video]
Stephen Diggs, Scripps [video]
Alberto Gonzalez, UH Manoa [video]
Daniel Garijo, USC [video]
Ouida Meier, UH Manoa [video]
Emily Law, JPL [video]
Ouida Meier & participants
Jason Leigh, UH Manoa
If you’re attending ASLO (Association for Sciences in Limnology and Oceanography) in Hawaii or will be in Honolulu on Feb. 26th and care about better ways to collaborate, solve data and workflow challenges, or take the next steps in the relentless digital revolution, join us in person!
We’re excited to be able to offer this workshop as a real-time webinar – please participate remotely if you can! We have an amazing lineup of presenters and workshop guides. Don’t miss out!
Funding gratefully acknowledged from NSF EarthCube CRESCYNT Coral Reef Science and Cyberinfrastructure Network, Ruth D. Gates, PI (crescynt.org)
Update: original post updated with slide links.